Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
PCPG rs34274351 chr2:242561110 A/G 3.79E-5 173 24.52 28.42 20.2 KM Plot
PCPG rs34279974 chr14:74374584 G/A 1.16E-5 176 25.4 27.2 10.43 KM Plot
PCPG rs34288706 chr1:40520087 A/G 0.000312 175 25.2 27.78 25.17 KM Plot
PCPG rs34309159 chr10:134419166 C/T 0.000313 172 25 25.97 2.23 KM Plot
PCPG rs34316788 chr2:242546363 C/T 4.87E-11 177 25.87 24.7 10.3 KM Plot
PCPG rs34317806 chr2:242537419 A/G 2.99E-5 176 25.87 27.27 20.28 KM Plot
PCPG rs34325511 chr4:10028867 G/A 0.000211 170 25.53 25.33 15 KM Plot
PCPG rs34327448 chr17:50261956 A/T 4.67E-5 171 25.77 28.47 14.43 KM Plot
PCPG rs34341642 chr12:53503606 TG/T 1.19E-10 174 25.08 27.08 3.05 KM Plot
PCPG rs34345010 chr14:74340605 G/A 9.6E-6 178 25.47 28.3 10.3 KM Plot
PCPG rs34349450 chr2:242596715 T/TTG 6.19E-11 175 25.87 24.85 10.3 KM Plot
PCPG rs34353375 chr14:74644183 AAT/A 0.000221 176 25.28 26.57 10.57 KM Plot
PCPG rs34357414 chr2:24310827 G/C 0.00011 178 25.17 27.27 17.43 KM Plot
PCPG rs34361545 chr22:21299225 GGC/G 7.74E-5 177 12.93 31.47 25.2 KM Plot
PCPG rs34363032 chr16:1714145 C/T 0 178 25.53 18.75 2.93 KM Plot